杨若林

杨若林，博士生导师

教育经历

2005-2008 中国科学院昆明动物研究所，博士生

1999-2002 兰州大学生命科学学院，硕士生

1995-1999 兰州大学生命科学学院，本科生

工作经历

2014- 西北农林科技大学生命科学学院，教授，博导

2011-2014 美国亚利桑那大学农业与生命科学学院，博士后

2009-2011 中国科学院遗传和发育生物学研究所，博士后

2002-2005 上海大学生命科学学院，助教

荣誉获奖

陕西省人才计划入选者

科学研究

1. 比较和进化基因组学：多水平，多组学跨物种比较

2. 生物信息学：利用机器学习（如深度学习理论）等算法研究调控基因组；对生物大数据进行深度分析

3. 表观基因组学：如：结合转录组，染色质三维结构，染色质开放性等信息研究基因印记机制

代表性研究论文

Zhang SJ, Liu L, Yang R, Wang X. Genome Size Evolution Mediated by Gypsy Retrotransposons in Brassicaceae. Genomics Proteomics Bioinformatics. 2020;18(3):321-332.

Yan Y, Li Z, Li Y, Wu Z, Yang R. Correlated Evolution of Large DNA Fragments in the 3D Genome of Arabidopsis thaliana. Mol Biol Evol. 2020;37(6):1621-1636.

Yang W, Zhao F, Chen M, Li Y, Lan X, Yang R, Pan C. Identification and characterization of male reproduction-related genes in pig (Sus scrofa) using transcriptome analysis. BMC Genomics. 2020;21(1):381.

Wu Z, Tang J, Zhuo J, Tian Y, Zhao F, Li Z, Yan Y, Yang R. Chromatin Signature and Transcription Factor Binding Provide a Predictive Basis for Understanding Plant Gene Expression. Plant Cell Physiol. 2019;60(7):1471-1486.

Zhu Y, Yin J, Liang Y, Liu J, Jia J, Huo H, Wu Z, Yang R, Gong H. Transcriptomic dynamics provide an insight into the mechanism for silicon-mediated alleviation of salt stress in cucumber plants. Ecotoxicol Environ Saf. 2019;174:245-254.

Tang J, Wu Z, Tian Y, Yang R. ICGEC: a comparative method for measuring epigenetic conservation of genes via the integrated signal from multiple histone modifications between cell types. BMC Genomics. 2020;21(1):356.

Liu X, Li Z, Yan Y, Li Y, Wu H, Pei J, Yan P, Yang R, Guo X, Lan X. Selection and introgression facilitated the adaptation of Chinese native endangered cattle in extreme environments. Evol Appl. 2020;14(3):860-873.

Yang R, Jarvis DE, Chen H, Beilstein MA, Grimwood J, Jenkins J, Shu S, Prochnik S, Xin M, Ma C, Schmutz J, Wing RA, Mitchell-Olds T, Schumaker KS, Wang X. The Reference Genome of the Halophytic Plant Eutrema salsugineum. Front Plant Sci. 2013;4:46.

Li G, Wang D, Yang R, Logan K, Chen H, Zhang S, Skaggs MI, Lloyd A, Burnett WJ, Laurie JD, Hunter BG, Dannenhoffer JM, Larkins BA, Drews GN, Wang X, Yadegari R. Temporal patterns of gene expression in developing maize endosperm identified through transcriptome sequencing. Proc Natl Acad Sci U S A. 2014;111(21):7582-7.

Xin M, Yang R, Yao Y, Ma C, Peng H, Sun Q, Wang X, Ni Z. Dynamic parent-of-origin effects on small interfering RNA expression in the developing maize endosperm.

BMC Plant Biol. 2014;14:192.

Yang R, Wang X. Organ evolution in angiosperms driven by correlated divergences of gene sequences and expression patterns. Plant Cell. 2013;25(1):71-82.

Xin M, Yang R, Li G, Chen H, Laurie J, Ma C, Wang D, Yao Y, Larkins BA, Sun Q, Yadegari R, Wang X, Ni Z. Dynamic expression of imprinted genes associates with maternally controlled nutrient allocation during maize endosperm development. Plant Cell. 2013;25(9):3212-27.

Yang R, Dai Z, Chen S, Chen L. MicroRNA-mediated gene regulation plays a minor role in the transcriptomic plasticity of cold-acclimated zebrafish brain tissue. BMC Genomics. 2011;12:605.